/********************************************************** ****************************************************
Purpose: this file contains all javascript functions for arraydesign module

Author: Seema Joshi (Persistent Systems Pvt. Ltd.)

Version: 1.0 <increment version number when change file after code freeze>

Version History:
-------------------------------------
Date		User			Comments
03/27/2007	Seema Joshi	Initial Creation

****************************************************************************************************************/

function openDownloadWin(link)
{
	if (link == "none")
		return;
	else
	{
		window.open(link);
		window.close();
	}
}

/*************************************************************************************************************
Purpose: this function is called when user click download link on search result
**************************************************************************************************************/
function downloadArrayDesign(adid, arraySetId,arraySetName,folderName,catalogReannotationFlag,customReannotationFlag,createdby_id,application_type)
{
	var contextpath = '';
	var currentUser;
	
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}
	
	if((folderName=="AgilentCatalog" || folderName=="AgilentStaging") && application_type!='microRNA' && application_type!='DNACapture')
	{
	//opens a popup for the user to select the  folder name(version of design) to download files under that folder 	
	var path = contextpath + "/array/downloadArrayDesign.do?action=populateCatalogFolderList&arraydesignid="+adid;
	//var path=contextpath+"/pages/common/rewriteFileConfirmation.jsp"
	window.open(path,'abc', 'width=450,height=225,scrollbars=no,location=no,resizable=no,top=200,left=300');
	}
	else
	{
		if(catalogReannotationFlag==1 ||customReannotationFlag==1 )
		{
			if(!(document.getElementById("personlogged").value==createdby_id))
			{
				var path = contextpath + "/array/downloadArrayDesign.do?action=displaylist&arraydesignid="+adid;
				document.forms[0].action=path;
				document.forms[0].submit();
			}else{
				showReannotationConfirmationDialog(adid);
				//var path = contextpath + "/array/downloadArrayDesign.do?action=displaylist&showcustompopup=true&arraydesignid="+adid;
				//window.open(path,'abc', 'width=900,height=300,scrollbars=no,location=no,resizable=no,top=200,left=300');
			}
		}else{
			var path = contextpath + "/array/downloadArrayDesign.do?action=displaylist&arraydesignid="+adid;
			document.forms[0].action=path;
			document.forms[0].submit();
		}
	}
}


/*************************************************************************************************************
Purpose: This function is called when user click download link on search result on home page under MyDesign Tab
**************************************************************************************************************/
function downloadArrayDesignFromHome(adid, arraySetId,arraySetName,folderName,catalogReannotationFlag,customReannotationFlag,createdby_id,application_type)
{
	var contextpath = '';
	
//	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
/*	} else {
		contextpath = "..";
	}*/
	
	if((folderName=="AgilentCatalog" || folderName=="AgilentStaging") && application_type!='microRNA' && application_type!='DNACapture')
	{
	//opens a popup for the user to select the  folder name(version of design) to download files under that folder 	
	var path = contextpath + "/array/downloadArrayDesign.do?action=populateCatalogFolderList&arraydesignid="+adid;
	//var path=contextpath+"/pages/common/rewriteFileConfirmation.jsp"
	window.open(path,'abc', 'width=450,height=225,scrollbars=no,location=no,resizable=no,top=200,left=300');
	}
	else
	{
		if(catalogReannotationFlag==1 ||customReannotationFlag==1 )
		{
			
			if(!(document.getElementById("personlogged").value==createdby_id))
			{
				var path = contextpath + "/array/downloadArrayDesign.do?action=displaylist&arraydesignid="+adid;
				//	var path = contextpath + "/array/rewriteArrayDesign.do?action=rewriteFiles&arraydesignid="+adid	
				document.forms[0].action=path;
				document.forms[0].submit();
			}
			else
			{
				showReannotationConfirmationDialog(adid);
				//var path = contextpath + "/array/downloadArrayDesign.do?action=displaylist&showcustompopup=true&arraydesignid="+adid;
				//window.open(path,'abc', 'width=900,height=300,scrollbars=no,location=no,resizable=no,top=200,left=300');
			}
			
		}
		else
		{
			var path = contextpath + "/array/downloadArrayDesign.do?action=displaylist&arraydesignid="+adid;
	//	var path = contextpath + "/array/rewriteArrayDesign.do?action=rewriteFiles&arraydesignid="+adid	
			document.forms[0].action=path;
			document.forms[0].submit();
		}
	}
}


function showReannotationConfirmationDialog(adid){
	showCommonLoadingDiv();
	var kw =
 	{
     	url: contextPath + "/array/downloadArrayDesign.do?action=displaylist&showcustompopup=true&arraydesignid="+adid,
     	load: function(data)
     	{
     		hideCommonLoadingDiv();
			if(data){
				var dialogtitle = resourceBundle.confirmlabel;
				var question;
				var okButtonLabel = resourceBundle.arraydesign_reannotate_label;
				var okClickAction = "javascript:sendDesignReannotation('"+adid+"')";
				var cancelButtonLabel =resourceBundle.arraydesign_download_label;
				var cancelButtonAction = "javascript:sendDesignDownload('"+adid+"')";
				if(data == 'A'){
					question = resourceBundle.arrayDesign_custom_rewrite_confirmation_reannotateanddownload_msg;
				}else{
					cancelButtonLabel='';
					question = resourceBundle.arrayDesign_custom_rewrite_confirmation_reannotate_msg;
				}
				openConfirmationDialogWithWidth(dialogtitle, question, okButtonLabel, okClickAction, cancelButtonLabel, cancelButtonAction,500);
			}
		},
     	error: function(type, error)
     	{
		},
     	headers: {'X-Requested-With': 'XMLHttpRequest'},
     	mimetype: "text/html"
	};
	dojo.xhrPost(kw);
}


function sendDesignDownload(adid)
{
	showCommonLoadingDiv();
	closeConfirmDialog();
	document.forms[0].action=contextPath+"/array/downloadArrayDesign.do?action=displaylist&showcustompopup=false&arraydesignid="+adid;
	document.forms[0].submit();
}

function sendDesignReannotation(adid)
{
	showCommonLoadingDiv();
	closeConfirmDialog();
	document.forms[0].action=contextPath+"/array/rewriteArrayDesign.do?action=rewriteFiles&showcustompopup=false&arraydesignid="+adid;
	document.forms[0].submit();
}
/*************************************************************************************************************
Purpose: this function is called when user click download link on Calatong Gene List page
**************************************************************************************************************/
function downloadCatalogGeneList(amdid)
{
	//var contextpath = '';
	//if (dojo.isIE) {
	//	contextpath = getElementHTML('hiddenContextPath');
	//} else {
	//	contextpath = getElementHTML('hiddenContextPath');
	//}
	//var path = contextpath + "/downloadArrayDesign.do?action=download&amdid="+amdid+"&catalogGeneList=catalogGeneList";
	//document.forms[0].action=path;
	//document.forms[0].submit();
	var contextpath = getElementHTML('hiddenContextPath');
	var sessionAttribute = 'downloadingModule' + 'ArrayDesign' + amdid;
	var path = contextpath +"/CommonDownloadServlet?downloadModuleType=ArrayDesign&amdid=";
	path = path	+amdid+"&catalogGeneList=catalogGeneList&sessionAttribute=" + sessionAttribute;
	openDownloadWindow(path, sessionAttribute);
}

/*************************************************************************************************************
Purpose: this function is called when user click submit link on search result
**************************************************************************************************************/
function submitArrayDesign(arrayDesignID,arraySetId,arraySetName)
{
  	if ( arraySetId != "" && arraySetId != "null" )
  	{
  		var textmessage = resourceBundle.submitSetConfirm;

  		var index = textmessage.indexOf("@");
		var fpart = textmessage.substring(0,index);
		var spart = textmessage.substring(index+1);
		var msg = fpart + arraySetName + spart;
		var status = confirm(msg);
  		if(status == true)
  		{
			var contextpath = '';
			if (dojo.isIE) {
				contextpath = getElementHTML('hiddenContextPath');
			} else {
				contextpath = "..";
			}
			var path = contextpath + "/arrayset/submitArraySet.do?eArrayAction=acceptconfirmation&arraysetid="+arraySetId;
			document.forms[0].action= path;
			document.forms[0].submit();
            	}
  	}else
  	{
  		var status = confirm(resourceBundle.submitDesignConfirm);
  		if(status == true)
  		{
			var contextpath = '';
			if (dojo.isIE) {
				contextpath = getElementHTML('hiddenContextPath');
			} else {
				contextpath = "..";
			}
			var path = contextpath + "/array/submitArrayDesign.do?eArrayAction=acceptconfirmation&arraydesignid="+arrayDesignID;
			document.forms[0].action= path;
			document.forms[0].submit();
  		}
  	}
}

/*************************************************************************************************************
Purpose: this function is called when user click submit link on search result for GP app type
**************************************************************************************************************/
function submitGPLibrary(arrayDesignID,libType)
{
	var okActionPath = "submitGPLibraryConfirm('"+arrayDesignID+"','"+libType+"')";
	var cancelActionPath = "closeConfirmDialog()";
	openConfirmationDialog(resourceBundle.confirmlabel,resourceBundle.submitLibConfirm,resourceBundle.yesbuttonlabel,okActionPath,resourceBundle.nobuttonlabel,cancelActionPath);
}

function submitGPLibraryConfirm(arrayDesignID,libType)
{
	closeConfirmDialog();
	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}
	var path = contextpath + "/array/submitArrayDesign.do?eArrayAction=acceptconfirmation&arraydesignid="+arrayDesignID+ "&libType=" +libType;
	document.forms[0].action= path;
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: this function is called when user upload order layout link on search result
**************************************************************************************************************/
function manageOrderedListArrayDesign(arrayDesignID)
{
  	var sessionId=document.getElementById('sessionId').innerHTML;
   	var contextpath = '';
   	if (dojo.isIE)
   	{
   		contextpath = getElementHTML('hiddenContextPath');
   	} else
   	{
   		contextpath = "..";
   	}
   	var featureLayoutWindow = "selectFeatureLayout" + sessionId;
   	var path = contextpath + "/array/manageOrderedList.do?eArrayAction=display&arraydesignid="+arrayDesignID;
	var win = window.open(path, featureLayoutWindow, 'width=450,height=280,scrollbars=yes,location=no,resizable=no,top=200,left=300');
}

/*************************************************************************************************************
Purpose: this function is called when user click convert link on search result
**************************************************************************************************************/
function convertArrayDesign(arrayDesignId,arraySetId,arraySetName)
{
	var contextpath = '';
	if (dojo.isIE)
	{
		contextpath = getElementHTML('hiddenContextPath');
	} else
	{
		contextpath = "..";
	}

  	if ( arraySetId != "" && arraySetId != "null" )
  	{
  		var textmessage = resourceBundle.convertSetConfirm;

  		var index = textmessage.indexOf("@");
		var fpart = textmessage.substring(0,index);
		var spart = textmessage.substring(index+1);
		var msg = fpart + arraySetName + spart;
		var status = confirm(msg);
  		if(status == true)
  		{
			var sessionId=document.getElementById('sessionId').innerHTML;
  			var path = contextpath + "/arrayset/convertArraySet.do?eArrayAction=display&arraysetid="+arraySetId;
  			document.forms[0].action=path;
  			document.forms[0].submit();
  		}
  	}else
  	{
  		var status = confirm(resourceBundle.convertDesignConfirm);
  		if(status == true)
  		{
			var sessionId=document.getElementById('sessionId').innerHTML;
  			var path = contextpath + "/array/convertArrayDesign.do?eArrayAction=display&arraydesignid="+arrayDesignId;
  			document.forms[0].action=path;
  			document.forms[0].submit();
  		}
  	}
}

/*************************************************************************************************************
Purpose: this function is called when user click convert link on search result for GP app type
**************************************************************************************************************/
function convertGPLibrary(arrayDesignId)
{
	var status = confirm(resourceBundle.convertLibConfirm);
	if(status == true)
	{
		var sessionId=document.getElementById('sessionId').innerHTML;
		var contextpath = '';
		if (dojo.isIE)
		{
			contextpath = getElementHTML('hiddenContextPath');
		} else
		{
			contextpath = "..";
		}
		var path = contextpath + "/array/convertArrayDesign.do?eArrayAction=display&arraydesignid="+arrayDesignId;
		document.forms[0].action=path;
		document.forms[0].submit();
	}
}

/*************************************************************************************************************
Purpose: this function is called when user click delete link on search result
**************************************************************************************************************/
function deleteArrayDesign(arrayDesignId,arraySetId,arraySetName,fromPage)
{
	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}

	if ( arraySetId != "" && arraySetId != "null" ){
		var textmessage = resourceBundle.deleteSetConfirm;
		var index = textmessage.indexOf("@");
	     	var fpart = textmessage.substring(0,index);
	     	var spart = textmessage.substring(index+1);
	     	var msg = fpart + arraySetName + spart;
	     	var status = confirm(msg);
		if(status == true){
			var path = contextpath + "/arrayset/deleteArraySet.do?eArrayAction=delete&arraySetID=" + arraySetId + "&fromPage=" + fromPage;
			document.forms[0].action= path;
			document.forms[0].submit();
		}
	}else{
		var status = confirm(resourceBundle.deleteDesignConfirm);
		if(status == true)
		{
   			var path = contextpath + "/array/deleteArrayDesign.do?eArrayAction=delete&arraydesignid=" + arrayDesignId + "&fromPage=" + fromPage;
			document.forms[0].action= path;
			document.forms[0].submit();
		}
	}
}

/*************************************************************************************************************
Purpose: this function is called when user click delete link on search result for GP App type
**************************************************************************************************************/
function deleteGPLibrary(arrayDesignId,libType,fromPage)
{

	var status = confirm(resourceBundle.deleteLibConfirm);
	if(status == true)
	{
		var contextpath = getElementHTML('hiddenContextPath');
		var path = contextpath + "/array/deleteArrayDesign.do?eArrayAction=delete&arraydesignid=" + arrayDesignId + "&fromPage=" + fromPage + "&libType=" +libType;
		document.forms[0].action= path;
		document.forms[0].submit();
	}
}

/*************************************************************************************************************
Purpose: this function is called when user click view attachment link on search result
**************************************************************************************************************/
function viewAttachment(arrayDesignId)
{
   	alert ( "view attachment " + arrayDesignId );
   /*	var path = "viewAttachments.do?arraydesignid=" + id;
   	window.open(path, "Attachments_PID68_"+id , "toolbar=no, scrollbars=auto, location=no, width=600, height=300, resizable=yes"); */
 }


/*************************************************************************************************************
Purpose: this function is called when user click view link on search result
**************************************************************************************************************/
function viewArrayDesign(arrayDesignId)
{
	var screenWidth= screen.width-100;
	var screenHeight= screen.height-120;
	var left = (screen.width/2)-(screenWidth/2);
	var screenConfig ='width=' +  screenWidth + ',height=' + screenHeight +',scrollbars=yes,location=no,resizable=yes,top=0,left='+left;
	var contextpath = getElementHTML('hiddenContextPath');
   	var path = contextpath + "/array/displayViewArrayDesign.do?eArrayAction=view&arraydesignid="+arrayDesignId;
   	window.open(path, "ArrayDesign_"+arrayDesignId , screenConfig);
}

/*************************************************************************************************************
Purpose: this function is called when user click edit link on search result
**************************************************************************************************************/
function editArrayDesign(arrayDesignId)
{
	var contextpath = getElementHTML('hiddenContextPath');
   	var path = contextpath + "/array/editArrayDesign.do?eArrayAction=display&arraydesignid="+arrayDesignId;
	document.forms[0].action= path;
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: this function is to move the arraydesign on domains
**************************************************************************************************************/
function moveMicroArrayDesignList()
{
	var sessionId = document.getElementById('sessionId').innerHTML;
	var moveToWindow = "MoveToWindow";
	window.name="moveAD" + sessionId;
	var popup=window.open('about:blank',moveToWindow,'toolbar=no, scrollbars=yes, location=no, width=800, height=600, resizable=yes');
	popup.opener.name=window.name;
	document.forms['searchForm'].target= moveToWindow;
	var contextpath = contextpath = getElementHTML('hiddenContextPath');
   	var path = contextpath + "/array/showDisplayDomainsList.do";
	document.forms['searchForm'].action=path;
	document.forms['searchForm'].submit();
	document.forms['searchForm'].target = "_self";
}

/*************************************************************************************************************
Purpose: this function is to move the arraydesign on domains
**************************************************************************************************************/
function moveDesign()
{
	if(getSelectedRowCount()!=0){
	var sessionId = document.getElementById('sessionId').innerHTML;
	var moveToWindow = "MoveToWindow";
	window.name="moveAD" + sessionId;
	var popup=window.open('about:blank',moveToWindow,'toolbar=no, scrollbars=yes, location=no, width=800, height=600, resizable=yes');
	popup.opener.name=window.name;
	document.forms['searchForm'].target= moveToWindow;
	var contextpath = contextpath = getElementHTML('hiddenContextPath');
   	var path = contextpath + "/array/showDisplayDomains.do";
	document.forms['searchForm'].action= path;
	document.forms['searchForm'].submit();
	document.forms['searchForm'].target = "_self";
	}else{
		var applicationType = getElementHTML('applicationType');
		if(applicationType == 'TargetEnrichment' ||
						applicationType == 'RNAEnrichment'){
			openAlertDialog("error",resourceBundle.moveshsrelibrary);
			
		}else{
			openAlertDialog("error",resourceBundle.moveshsremicroarraydesign);
		}
	}
}

/****************************************************
Purpose: This function returns to Search Page after user clicks 'Cancel' button
*****************************************************/
function returnToArrayDesignSearch()
{
	var contextpath = contextpath = getElementHTML('hiddenContextPath');
   	var path = contextpath + "/array/searchArrayDesign.do?action=display";
	document.forms[0].action= path;
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: this function is called when user click copy link on search result
**************************************************************************************************************/
function copyArrayDesign(arrayDesignId)
{
   	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}
   	var path = contextpath + "/array/copyArrayDesign.do?eArrayAction=copy&arraydesignid="+arrayDesignId;
	document.forms[0].action= path;
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: this function is to share the arraydesign in collaboration domains
function shareDesign()
{
	var shareToWindow = "ShareToWindow";
	var popup=window.open('about:blank',shareToWindow,'toolbar=no, scrollbars=yes, location=no, width=650, height=500, resizable=yes');
	document.forms['searchForm'].target= shareToWindow;
	document.forms['searchForm'].action="shareAD.do";
	document.forms['searchForm'].submit();
}
**************************************************************************************************************/

/*************************************************************************************************************
Purpose: this function is to share the arraydesign in collaboration domains
**************************************************************************************************************/
function shareDesign()
{
	if(getSelectedRowCount()!=0){
	var path="shareAD.do";
	document.forms['searchForm'].action=path;
	document.forms['searchForm'].submit();
    }else{
	var applicationType = getElementHTML('applicationType');
	if(applicationType == 'TargetEnrichment' ||
					applicationType == 'RNAEnrichment'){
		openAlertDialog("error",resourceBundle.moveshsrelibrary);
		
	}else{
		openAlertDialog("error",resourceBundle.moveshsremicroarraydesign);
	}
}
}

function shareMicroArrayDesignList()
{
	var path="shareADList.do";
	document.forms['searchForm'].action=path;
	document.forms['searchForm'].submit();
}

/*************************************************************************************************************
Purpose: this function is called when user click reset button on create arraydesign page.
**************************************************************************************************************/
function createArrayDesign()
{
 	var contextpath = '';
 	if (dojo.isIE) {
 		contextpath = getElementHTML('hiddenContextPath');
 	} else {
 		contextpath = "..";
 	}
 	var path = contextpath + "/array/createArrayDesign.do?eArrayAction=createpage";
 	document.forms[0].action= path;
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: this function is called when user click approve locking button on search arraydesign page.
**************************************************************************************************************/
function openLockingDecisionWindow(arrayDesignId)
{
//	var sessionId=document.getElementById('sessionId').innerHTML;
//	var contextpath = '';
//	if (dojo.isIE)
//	{
//		contextpath = getElementHTML('hiddenContextPath');
//	} else
//	{
//		contextpath = "..";
//	}
//	window.name="AD" + sessionId;
//	var lockingReasonWindow = "lockingReasonPopup" + sessionId;
//	var path = contextpath + "/array/editArrayDesign.do?eArrayAction=displayReasonList&arraydesignid="+arrayDesignId;
//	var win = window.open('about:blank', lockingReasonWindow, "width=450,height=400 toolbar=no, scrollbars=yes, location=no,resizable=yes");
//   	document.forms[0].target=lockingReasonWindow;
//   	document.forms[0].action=path;
//	document.forms[0].submit();
//   	document.forms[0].target="_self";

	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}
	var path = contextpath + "/array/editLockingView.do?eArrayAction=display&arraydesignid="+arrayDesignId;
	document.forms[0].action= path;
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: this function opens new window to show FTP folder in Batch GEML Upload
**************************************************************************************************************/
function openNewWindow(helpLink)
{
	window.open(helpLink, "", "location=no,resizable=yes,scrollbars=yes");
}

/*************************************************************************************************************
Purpose: this function resets the window status bar to hide FTP connection info
**************************************************************************************************************/
function clearStatus()
{
	window.status="";
}

/*************************************************************************************************************
Purpose: It sumbits the form to save the Batch GEML Job entry in DB queue
**************************************************************************************************************/
function saveBatchGEMLJob()
{
	document.forms[0].action= "showBatchGEMLUpload.do?action=save";
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: It resets the Batch GEML UI page
**************************************************************************************************************/
function resetBatchGEMLJob()
{
	document.forms[0].action= "showBatchGEMLUpload.do?action=reset";
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: It sumbits the form to removw the selected Batch GEML Job entry from DB queue
**************************************************************************************************************/
function removeBatchGEMLJob()
{
	document.forms[1].action= "removeBatchGEMLUpload.do?action=remove";
	document.forms[1].submit();
}

/*************************************************************************************************************
Purpose: For Home Page Wizard Creation. To Continue Array Design From uploaded probes
**************************************************************************************************************/
function cotinueDesign(probeGroupId,species,dwqId,status,wizardName)
{
	var screenWidth= 1040;
	var screenHeight= 700;
	var left = (screen.width/2)-(screenWidth/2);
    var screenConfig ='width=' +  screenWidth + ',height=' + screenHeight +',scrollbars=yes,location=no,resizable=yes,top=0,left='+left;
	var contextpath = document.forms[0].elements['contextPathHidden'].value;
	if(status == "HD Search Complete")
	{
		var path = contextpath +"/common/arrayDesignUsingWizard.do?eArrayAction=createProbeGroupHDSearchWizard&designWizardId="+dwqId+"&wizardSearch=true";
 	}
	else
	{
		var path = contextpath +"/common/arrayDesignUsingWizard.do?eArrayAction=display&probeGroupId="+probeGroupId+"&species="+species+"&designWizardId="+dwqId+"&wizardName="+wizardName;
	}
	catWindow =window.open(path,null,screenConfig);
}

/*************************************************************************************************************
Purpose: For Home Page Wizard Creation. To View HD Search Result
**************************************************************************************************************/
function viewHDResults(dwqId,status,probeGroupId)
{
	var contextpath = document.forms[0].elements['contextPathHidden'].value;
	var path="";
	if(status == 'HD Probe Group created')
	{
		path = contextpath + "/probeGroup/viewProbeGroup.do?action=view&probegroupid="+probeGroupId;
	}
	else
	{
		path = contextpath +"/common/arrayDesignUsingWizard.do?eArrayAction=displayHDSearchWizard&designWizardId="+dwqId+"&wizardSearch=true";
	}
	catWindow =window.open(path,null,'width=1000,height=600,scrollbars=yes,location=no,resizable=yes,top=140,left=80');
}

/*************************************************************************************************************
Purpose: For Home Page Wizard Creation. To delete wizard entry
**************************************************************************************************************/
function deleteDesignWizardEntry(dwqId,status)
{
	var contextpath = document.forms[0].elements['contextPathHidden'].value;
   	var showViewAll =document.viewForm.showView.value;
	var confirmValue="";
	if(status == "Complete" ||status == "HD Probe Group created")
	{
		confirmValue=confirm(resourceBundle.deleteHDWizardConfirm);
	}
	else
	{
		confirmValue=confirm(resourceBundle.deleteWizardConfirm);
	}
	if(confirmValue!=false)
	{
		document.location.href=contextpath+"/common/arrayDesignUsingWizard.do?eArrayAction=deleteWizardQueue&designWizardId="+dwqId+"&showViewAll="+showViewAll+"&status="+status;
	}
	else{
		return;
	}
}

/*************************************************************************************************************
Purpose: this function is called when user click quote link on search result
**************************************************************************************************************/
function orderArrayDesign(arraydesignid,arraysetid,arraysetname)
{
	var contextpath = '';
	var path = '';
	if (dojo.isIE)
		contextpath = getElementHTML('hiddenContextPath');
	else
		contextpath = "..";
	if ( arraysetid != "" && arraysetid != "null" )
	{
		var textmessage = resourceBundle.orderSetConfirm;
		var index = textmessage.indexOf("@");
		var fpart = textmessage.substring(0,index);
		var spart = textmessage.substring(index+1);
		var msg = fpart + arraysetname + spart;
		var status = confirm(msg);

		if(status == true)
  		{
			path = contextpath + "/array/orderComplete.do?eArrayAction=displayOrderDetails&ArraySetId=" +
				arraysetid + "&fromPage=searchArrayDesignPage";
		}
		else
		{
			path = contextpath + "/array/orderComplete.do?eArrayAction=displayOrderDetails&ArrayDesignId=" +
				arraydesignid + "&fromPage=searchArrayDesignPage";

		}
	} else
	{
		path = contextpath + "/array/orderComplete.do?eArrayAction=displayOrderDetails&ArrayDesignId=" +
			arraydesignid + "&fromPage=searchArrayDesignPage";
	}
	document.forms[0].action= path;
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: this function is called when user click quote link on search result for GP.
**************************************************************************************************************/
function orderLibrary(arraydesignid,arraysetid,arraysetname,isXT)
{
	orderLibrary(arraydesignid,arraysetid,arraysetname,isXT,false)
}

function orderLibrary(arraydesignid,arraysetid,arraysetname,isXT,isXT2)
{
	var contextpath = '';
	var path = '';
	if (dojo.isIE)
		contextpath = getElementHTML('hiddenContextPath');
	else
		contextpath = "..";
	if ( arraysetid != "" && arraysetid != "null" )
	{
		var textmessage = resourceBundle.orderLibSetConfirm;
		var index = textmessage.indexOf("@");
		var fpart = textmessage.substring(0,index);
		var spart = textmessage.substring(index+1);
		var msg = fpart + arraysetname + spart;
		var status = confirm(msg);

		if(status == true)
  		{
			path = contextpath + "/array/orderComplete.do?eArrayAction=displayOrderDetails&ArrayDesignId=" +
				arraysetid + "&fromPage=searchArrayDesignPage&isXT="+isXT+"&isXT2="+isXT2;
		}
		else
		{
			path = contextpath + "/array/orderComplete.do?eArrayAction=displayOrderDetails&ArrayDesignId=" +
				arraydesignid + "&fromPage=searchArrayDesignPage&isXT="+isXT+"&isXT2="+isXT2;
		}
	} else
	{
		path = contextpath + "/array/orderComplete.do?eArrayAction=displayOrderDetails&ArrayDesignId=" +
			arraydesignid + "&fromPage=searchArrayDesignPage&isXT="+isXT+"&isXT2="+isXT2;
	}
	document.forms[0].action= path;
	document.forms[0].submit();
}


/*************************************************************************************************************
Purpose: this function is called when user click quote link on Home Page MyDesign
**************************************************************************************************************/
function orderArrayDesignHomeWithAppType(arraydesignid,arraysetid,arraysetname,applicationType,isXT)
{	
	if(applicationType =="TargetEnrichment" || applicationType=="RNAEnrichment")
	{
		orderArrayDesignHomeTE(arraydesignid,arraysetid,arraysetname);
	}
	else
	{	orderArrayDesignHome(arraydesignid,arraysetid,arraysetname,isXT,false);
	}
	}

function orderArrayDesignHomeTE(arraydesignid,arraysetid,arraysetname)
{
	
	
	dojo.xhrPost
	(
	  {
		 url:contextPath + "/array/orderTECompleteTE.do?eArrayAction=checkForErrorBeforeOrderingProcess&ArrayDesignId=" + arraydesignid,
		
		 headers: {'X-Requested-With': 'XMLHttpRequest'},

		 mimetype: "text/html",
		 changeUrl: true,
		 load: function( value)
		 {
			 var errorData = JSON.parse(value);
			 if(errorData!=null && errorData.errorStatus=="true")
			 {
				
				 openAlertDialog("error",errorData.errorMessage);
				 
				 
			 }
			 else
			 {
				
				
						var path=contextPath + "/array/orderTECompleteTE.do?eArrayAction=displayOrderDetails&ArrayDesignId=" + arraydesignid + "&fromPage=searchArrayDesignPage";
						window.open(path,"orderLibrary",'width=800,height=700,toolbar=no,menubar=no,titlebar=no,resizable=no,scrollbars=no');
					
			 }
		 },
			error: function(error) {
			
			openAlertDialog("error",error.message);
		 }
		}
	 );
	
}
function orderArrayDesignHome(arraydesignid,arraysetid,arraysetname,isXT,isXT2)
{
	var contextpath = document.forms[0].elements['contextPathHidden'].value;
	if ( arraysetid != "" && arraysetid != "null" )
	{
		var textmessage = resourceBundle.orderSetConfirm;
		var index = textmessage.indexOf("@");
		var fpart = textmessage.substring(0,index);
		var spart = textmessage.substring(index+1);
		var msg = fpart + arraysetname + spart;
		var status = confirm(msg);
		if(status == true)
  		{
			var path = contextpath + "/array/orderComplete.do?eArrayAction=displayOrderDetails&ArraySetId=" + arraysetid + "&fromPage=searchArrayDesignPage&isXT="+isXT+"&isXT2="+isXT2;
			document.forms[0].action= path;
			document.forms[0].submit();
		}
		else
		{
			var path = contextpath + "/array/orderComplete.do?eArrayAction=displayOrderDetails&ArrayDesignId=" + arraydesignid + "&fromPage=searchArrayDesignPage&isXT="+isXT+"&isXT2="+isXT2;
			document.forms[0].action= path;
			document.forms[0].submit();

		}
	} else
	{
		var path = contextpath + "/array/orderComplete.do?eArrayAction=displayOrderDetails&ArrayDesignId=" + arraydesignid + "&fromPage=searchArrayDesignPage&isXT="+isXT+"&isXT2="+isXT2;
		document.forms[0].action= path;
		document.forms[0].submit();
	}
}

/*************************************************************************************************************
Purpose: this function is called from array design notification
**************************************************************************************************************/
function subscribeNotification()
{
	if ( getSelectedRowCount() == 0 ) {
		alert (resourceBundle.subscribeWarning);
		return;
	}

	var path="arraydesignNotificationUpdate.do?action=subscribe";
	document.forms['searchForm'].action=path;
	document.forms['searchForm'].submit();
}

function unsubscribeNotification()
{
	if ( getSelectedRowCount() == 0 ) {
		alert (resourceBundle.subscribeWarning);
		return;
	}

	var path="arraydesignNotificationUpdate.do?action=unsubscribe";
	document.forms['searchForm'].action=path;
	document.forms['searchForm'].submit();
}

/*************************************************************************************************************
Purpose: this function is called when user click change control type link on search result
**************************************************************************************************************/
function changeControlType(arrayDesignId)
{
	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}
   	var path = contextpath + "/array/changeControlTypeView.do?eArrayAction=display&arraydesignid="+arrayDesignId;
	document.forms[0].action= path;
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: this function is called when user clicks on  ownershiptransfer
**************************************************************************************************************/
function ownershiptranser()
{
	//var contextpath = "";
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}
	var winname = "domainList";
	var popup = window.open('about:blank',winname,'width=700,height=400,toolbar=no,menubar=no,titlebar=no,resizable=yes,scrollbars=yes');
	window.name =  "ArrayDesign" + document.getElementById('sessionId').innerHTML; ;
	popup.opener =  window.name;
	document.forms['searchForm'].target=winname;
	document.forms['searchForm'].action=contextpath + "/array/transferObjectValidate.do?objectType=ARRAYDESIGN";
	document.forms['searchForm'].submit();
	document.forms['searchForm'].target = "_self";
}

/*************************************************************************************************************
Purpose: this function is called when user click update GPL link on search result
**************************************************************************************************************/
function updateGPL(arrayDesignId)
{
	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}
   	var path = contextpath + "/array/updateGPL.do?eArrayAction=display&arraydesignid="+arrayDesignId;
	document.forms[0].action= path;
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: this function is called when user click update catalog array on search result
**************************************************************************************************************/
function updateCatalogArray(arrayDesignId)
{
	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}
   	var path = contextpath + "/array/updateCatalogArray.do?eArrayAction=display&arraydesignid="+arrayDesignId;
	document.forms[0].action= path;
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: this function is called to validate values of array design edit/create page.
**************************************************************************************************************/
function validateArrayDesignPage()
{
	var obj;
	var fieldName;
	var type;
	var maxLen = 0;
	var isEdit = false;
	var allEle = document.forms[0].elements;

	for(i=0;i<allEle.length;i++)
	{
		if(allEle[i].name == "selStatus")
		{
			isEdit = true;
		}
	}

	//For Array Design name
	obj = document.forms[0].name;
	if(isBlank(obj) == true)
	{
		openAlertDialog("error",resourceBundle.namerequired);
		obj.focus();
		return false;
	}

	if(document.forms[0].baitLength) {
		fieldName = "Library Name";
	} else {
		fieldName = "Microarray Design Name";
	}
	type = "alphanumericwithspace";

	vType = "description";
	vtIni = "";
	vExpr = new RegExp("[A-Za-z0-9-_.\b ]");

	var  val = obj.value;
	var len = val.length;
	for(var i=0;i<len;i++)
	{
		if(vExpr.test(val.charAt(i)) == false)
		{
			openAlertDialog("error",resourceBundle.designNameValidate);
			obj.focus();
			return false;
		}
	}

	maxLen = 100;
	if(isBlank(obj) == false)
	{
		var val = obj.value;
		var len = val.length;
		if (len > maxLen)
		{
			openAlertDialog("error",resourceBundle.designLengthValidate);
			obj.focus();
			return false;
		}
	}

	if(document.forms[0].baitLength) {
		obj = document.forms[0].baitLength;
		 if ( document.forms[0].baitLength.value == null || document.forms[0].baitLength.value == '' ||document.forms[0].baitLength.value == 'Select' )
		{
			openAlertDialog("error",resourceBundle.baitLenghtRequired);
			obj.focus();
			return false;
		}
	}

	if(applicationType=='TargetEnrichment' || applicationType=='RNAEnrichment')
		document.forms[0].indexSelArrayFormat.value=0;
	else
	{
		obj = document.forms[0].selArrayFormat;
		if ( document.forms[0].selArrayFormat.value == null || document.forms[0].selArrayFormat.value == "" )
		{
			if(document.forms[0].baitLength) {
				openAlertDialog("error",resourceBundle.controlGridRequired);
			} else {
				openAlertDialog("error",resourceBundle.designFormatRequired);
				obj.focus();
			}
			return false;
		}
	}
	obj = document.forms[0].desc;
	maxLen = 4000;
	if(isBlank(obj) == false)
	{
		var val = obj.value;
		var len = val.length;
		if (len > maxLen)
		{
			openAlertDialog("error",resourceBundle.designDescLenValidate);
			obj.focus();
			return false;
		}
	}

	//For search words
	obj = document.forms[0].searchWords;
	if(isBlank(obj) == false)
	{
		var val = obj.value;
		var len = val.length;
		if (len > maxLen)
		{
			openAlertDialog("error",resourceBundle.designKeywordsLenValidate);
			obj.focus();
			return false;
		}
	}

	type = "alphanumericwithspace";
	if (obj.value.indexOf(":")!=-1)
	{
		openAlertDialog("error",resourceBundle.designKeywordsValidate1);
		obj.focus();
		return false;
	}

	var pattern = new RegExp("]:");
	if (obj.value.search(pattern)!=-1 || obj.value.indexOf("[:")!=-1)
	{
		openAlertDialog("error",resourceBundle.designKeywordsValidate2);
		obj.focus();
		return false;
	}

	var pattern = new RegExp("\\:");
	if (obj.value.indexOf("\\:")!=-1 || obj.value.indexOf("[:")!=-1)
	{
		openAlertDialog("error",resourceBundle.designKeywordsValidate3);
		obj.focus();
		return false;
	}

	var pattern = new RegExp("/:");
	if (obj.value.search(pattern)!=-1 || obj.value.indexOf("[:")!=-1)
	{
		openAlertDialog("error",resourceBundle.designKeywordsValidate3);
		obj.focus();
		return false;
	}

	if(document.forms[0].applicationType  && document.forms[0].applicationType.value =="TargetEnrichment"){
		if(document.getElementById('divNoOfSlideCount')!=null && document.getElementById('divNoOfSlideCount')!='undefined')
		{
			var slideCountStr=document.getElementById('divNoOfSlideCount').innerHTML;
			var slideCount= parseInt(slideCountStr) ;
				if(slideCount > document.getElementById('maxAllowedCustomLibSetCount').value)
				{
					openAlertDialog("error","A library set must contain "+ document.getElementById('maxAllowedCustomLibSetCount').value +" or fewer libraries.");
					return false ;
				}
			
		}
	}
	//For SNP Probe Groups
	// 5% of CGH biological probes per CGH+SNP microarray

	if(document.forms[0].snpDesign && document.forms[0].snpDesign.value == 'true') {

	   if(document.forms[0].numOfBiologicalProbeCount) {
		   var numBiologicalprobeCount = document.forms[0].numOfBiologicalProbeCount.value;
		   var numTotalFeature = document.forms[0].totalFeatures.value;
		 if(parseInt(numBiologicalprobeCount) <  parseInt(numTotalFeature)*0.05){
		    openAlertDialog("error",resourceBundle.snp5percentCGHBiolicalProbes);
			return false;
	     }
	   }

	}
	// 1% normalize probegroup should be present while creating any CGH Design.
	var totalNormalizaeCount = document.forms[0].normalizationProbeCount.value;
	if(document.forms[0].applicationType.value =="CGH"){
		 var numTotalFeature = document.forms[0].totalFeatures.value;
	  if(parseInt(totalNormalizaeCount) > 0 && parseInt(totalNormalizaeCount) < parseInt(numTotalFeature)*0.01){
	     openAlertDialog("error",resourceBundle.normalizationProbeValidation);
		 return false;
	  }
	}



	//For Probe Groups
	if(	(probeCount.length == 0) && (normalizationProbesCount.length == 0) && (replicateProbeCount.length == 0))
	{
		if(document.forms[0].baitLength) {
			openAlertDialog("error",resourceBundle.designBaitGroupRequired);
		} else {
			openAlertDialog("error",resourceBundle.designProbeGroupRequired);
		}
		return false;
	}else
	{
		var validateresult =  validateReplicate();
		if (validateresult == false)
			return false;
	}

	//For Comments
	obj = document.forms[0].comments;
	type = "alphanumericwithspace";
	if(document.forms[0].owner.value == "false")
	{
		if(isBlank(obj) == true)
		{
			openAlertDialog("error",resourceBundle.designCommentRequired);
			obj.focus();
			return false;
		}
	}

	if(isBlank(obj) == false)
	{
		var val = obj.value;
		var len = val.length;
		if (len > maxLen)
		{
			openAlertDialog("error",resourceBundle.designCommentLenValidate);
			obj.focus();
			return false;
		}
	}


	for (k = 0;k < replicateCount.length;k++)
	{
		var newvalue = replicateCount[k];
		var numeric = /[.@!#^$%&*()+={}?><:;|/\\a-zA-Z]/;
		if(numeric.test(newvalue))
		{
  			var textmessage = resourceBundle.designRepCntValidate;

  			var index = textmessage.indexOf("@");
			var fpart = textmessage.substring(0,index);
			var spart = textmessage.substring(index+1);
			var msg = fpart + newvalue + spart;

			openAlertDialog("error",msg);
			return false;
		}
	}

	for (k = 0;k < replicateReplicateCount.length;k++)
	{
		var newvalue = replicateReplicateCount[k];
		var numeric = /[.@!#^$%&*()+={}?><:;|/\\a-zA-Z]/;
		if(numeric.test(newvalue))
		{
  			var textmessage = resourceBundle.designRepCntValidate;

  			var index = textmessage.indexOf("@");
			var fpart = textmessage.substring(0,index);
			var spart = textmessage.substring(index+1);
			var msg = fpart + newvalue + spart;

			openAlertDialog("error",msg);
			return false;
		}
	}

	if (document.forms[0].selArrayFormat)
	{
		var selindex = document.forms[0].selArrayFormat.selectedIndex;
		if(document.forms[0].selArrayFormat[selindex].value != null &&
			document.forms[0].selArrayFormat[selindex].value != '')
		{
			var cgCount = getElementValue("controlGridProbeCount");
		if(document.forms[0].baitLength) {
				var gpapptype = "true";
				var statistics = calculateStatisticsForGP (slArrayCountList[selindex],
											    slTotalFeatureList[selindex],
											    cgCount,
											    probeCount,
											    replicateCount,
											    pgType,
											    enablearrayset,
											    gpapptype);

			} else {
				if(document.forms[0].distinctTargets) {
					var featurePerTarget = document.forms[0].featurePerTarget.value;
					var distinctTargets = document.forms[0].distinctTargets.value;

					var statistics = calculateStatisticsMicroRNA ( slArrayCountList[selindex],
										slTotalFeatureList[selindex],
										cgCount ,
										probeCount,
										enablearrayset,
										featurePerTarget,
										distinctTargets);
				} else  if(document.forms[0].arrayCategory && document.forms[0].arrayCategory.value == "CGH+SNP")
					{
							var statistics = calculateStatisticsForSNP (slArrayCountList[selindex],
								    slTotalFeatureList[selindex],
								    cgCount,
								    probeCount,
								    replicateCount,
								    pgType,
								    enablearrayset,
								    normalizationProbesCount,
								    replicateProbeCount,
								    replicateReplicateCount,
								    snpCount,
								    snpReplicateCount);
							updateStatisticsDisplay(statistics);
				}
					else {
					var statistics = calculateStatistics (slArrayCountList[selindex],
											    slTotalFeatureList[selindex],
											    cgCount,
											    probeCount,
											    replicateCount,
											    pgType,
											    enablearrayset,
											    normalizationProbesCount,
											    replicateProbeCount,
											    replicateReplicateCount);
				}

					// at least 2000 distinct snp probes are required for creating snp design;
				if(document.forms[0].snpDesign && document.forms[0].snpDesign.value == 'true') {

					var minSNPCount = document.getElementById("minimumSNPCountId").value;
					if(document.forms[0].selStatus){
						var designStatus = document.forms[0].selStatus.value;
						if(designStatus == 'Locked' || designStatus == 'Submit') {
							//openAlertDialog("error","distinct probes"+document.forms[0].distinctSNPProbes.value+"  "+minSNPCount);
							var ditinctSNPProbe=document.forms[0].distinctSNPProbes.value;
							//openAlertDialog("error","ditinctSNPProbe "+ ditinctSNPProbe);
						   if(document.forms[0].distinctSNPProbes){
							   if((parseInt(ditinctSNPProbe) < parseInt(minSNPCount))){
								  openAlertDialog("error",resourceBundle.snpValidationMinimumSNPProbes);
								  return false;
						   }
						   }
						
						}
					}
				}
				// display error message if control per array exceeds half of feature per slide
				var featurecount = slTotalFeatureList[selindex];
				var controlperArray =   statistics.totControlCount / statistics.microArrayReplica ;

				// display error message if control per array exceeds half of feature per slide
				var featurecount = slTotalFeatureList[selindex];
				var message = resourceBundle.designCtrlPrbsFillHalf;
				var retval = validateControlCount(statistics,featurecount,message);
				if ( retval == false)
				{
					return false;
				}

				// set the default color to all statistic values.
				updateStatisticsDefaultColorDisplay();
				// verify if normalization, replicate and user control probes count exceeded.
				var exceedCountFlag =  getFeatureCount(selindex, cgCount) ;
				if(exceedCountFlag)
				{
					if(document.forms[0].applicationType.value =="CGH")
					{
						openAlertDialog("error",resourceBundle.designProbeLimitValidateCGH);
					}else if(document.forms[0].applicationType.value =="Expression")
					{
						openAlertDialog("error",resourceBundle.designProbeLimitValidateExp);
					}
					updateStatisticsChangeColorDisplay();
					return false;
				}
			}

	} else 	{
			if(document.forms[0].baitLength)
				openAlertDialog("error",resourceBundle.baitLenghtRequired);
			else
				openAlertDialog("error",resourceBundle.designFormatRequired);
			obj.focus();
			return false;
		}
	}

	var percentfilled = getElementValue('perFilled') ;
	document.forms[0].exceedCount.value = 0;
	if (percentfilled > 100*1)
	{
		var totalfeatures = document.forms[0].totalFeatures.value;
		var exceedcount = 0;
		if ( totalfeatures != 0 )
		{
			exceedcount =  ( (percentfilled * 1  - 100 ) / 100 ) * totalfeatures;
			exceedcount = Math.round(exceedcount * Math.pow(10,0))/Math.pow(10,0);
		}

		if (exceedcount > 0)
		{
			document.forms[0].exceedCount.value = exceedcount;
		} else
		{
			if(document.forms[0].baitLength)
			{
				openAlertDialog("error",resourceBundle.libFeatureExceed);
				return false;
			} else
			{
				openAlertDialog("error",resourceBundle.designFeatureExceed);
				return false;
			}
		}
	}

	return true;
}

// get the feature probes count for normalization, replicate and users control probes
function getFeatureCount(selindex, cgCount)
{

	var PGTYPE_BIOLOGICAL = "BiologicalProbeGroup";
	var PGTYPE_CONTROL = "CustomControlProbeGroup";
	var PGTYPE_AGILENTCONTROLPG = "AgilentControlProbeGroup";
	var PGTYPE_REPLICATE = "ReplicateProbeGroup";

	// calculate sum of biological and user control probes
	var bioProbeCountSum = 0;
	var ucProbeCountSum = 0;

	// calculate sum of normalization and replicate probes
	var normProbeCountSum = 0;
	var replProbeCountSum = 0;
	var totAgilentControlPGCount = 0;

	// for simple probegroup
	if(probeCount != null)
	{
		for (var i = 0;i<probeCount.length;i++)
		{
			if ( pgType[i] == PGTYPE_BIOLOGICAL )
			{
				bioProbeCountSum += probeCount[i] * replicateCount[i];
			}else if (pgType[i] == PGTYPE_CONTROL )
			{
				ucProbeCountSum += probeCount[i] * replicateCount[i];
			}else if (pgType[i] == PGTYPE_AGILENTCONTROLPG )
			{
				totAgilentControlPGCount += probeCount[i] * replicateCount[i];
			}
		}
	}
	// Calculate free features per micro array
	var freeFeaturePerArray = slTotalFeatureList[selindex]*1 - ((cgCount*1) + totAgilentControlPGCount);
	// for normalization probegroup
	if(normalizationProbesCount != null)
	{
		for (var i = 0;i<normalizationProbesCount.length;i++)
		{
			normProbeCountSum += normalizationProbesCount[i];
		}
	}
	// for replicate probegroup
	if(replicateProbeCount != null)
	{
		for (var i = 0;i<replicateProbeCount.length;i++)
		{
			replProbeCountSum += replicateProbeCount[i] * replicateReplicateCount[i];
		}
	}
	if((freeFeaturePerArray - (normProbeCountSum + ucProbeCountSum + replProbeCountSum)) < 1){
		return true;
	}
	else{
		return false;
	}
}

/*************************************************************************************************************
Purpose: this function is used to delete the specified publish design object
**************************************************************************************************************/
function deletePublishDesign(publishDesignId,arraySetId,appType)
{
	var textmessage="";
	var contextpath = '';
	var status = "";
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}
	/*
	  If Published Design is part of ArraySet then delete
	  All Published ArrayDesign that are part of ArraySet.
	 */

	if((appType).toUpperCase() !=  ("TargetEnrichment").toUpperCase()
			&& (appType).toUpperCase() !=  ("RNAEnrichment").toUpperCase())
	{
		if ( arraySetId != "" && arraySetId != "null" )
		{
			textmessage = resourceBundle.deletePublishSetConfirm;
		}else{
			textmessage = resourceBundle.deletePublishDesignConfirm;
		}
	}else{
		textmessage = resourceBundle.deletePublishLibraryConfirm;
	}
	var status = confirm(textmessage);
	if(status == true)
  	{
  	   	var path = contextpath + "/array/showPublicPage.do?eArrayAction=deletePublishDesign&publishdesignid="+publishDesignId+"&arraySetID="+arraySetId;
		document.forms[0].action = path
		document.forms[0].submit();
	}
}

function editPublishDesign(publishDesignId)
{
	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}

    	var sessionId=document.getElementById('sessionId').innerHTML;
	window.name="Opener"+sessionId;
   	var winname = "PublishDesign"+sessionId;

    	var popup=window.open('about:blank',winname,'width=1000,height=1000,scrollbars=yes,status=yes');

	if (dojo.isIE)
	{
		popup.opener=window;
	}
	else
	{
  		popup.opener.name=window.name;
	}
	document.forms[0].target=winname;
	var path = contextpath + "/array/PublishDesign.do?eArrayAction=editPublishDesign&publishdesignid="+publishDesignId;
	document.forms[0].action = path
	document.forms[0].submit();
	document.forms[0].target="_self";
}

function publishDesign(arrayDesignId,arraySetId,arraySetName, appType)
{
	if((appType).toUpperCase() != ("TargetEnrichment").toUpperCase()
			&& (appType).toUpperCase() != ("RNAEnrichment").toUpperCase())
	{
		if ( arraySetId != "" && arraySetId != "null" )
		{
			var textmessage = resourceBundle.publishSetConfirm;
			var index = textmessage.indexOf("@");
			var fpart = textmessage.substring(0,index);
			var spart = textmessage.substring(index+1);
			var msg = fpart + arraySetName + spart;
			var status = confirm(msg);
			if(status == false)
	  		{
			  return;
			}
		}
	}else{
		arraySetId = '';
	}
	var contextpath = getElementHTML('hiddenContextPath');
	var path = contextpath + "/array/PublishDesign.do?eArrayAction=saveNewPublishDesign&arraydesignid="+arrayDesignId+"&arraySetID="+arraySetId;
	document.forms[0].action = path
	document.forms[0].submit();
}

function publishCollabDesign(arrayDesignId,arraySetId,arraySetName, appType)
{

	if((appType).toUpperCase() != ("TargetEnrichment").toUpperCase()
			&& (appType).toUpperCase() != ("RNAEnrichment").toUpperCase())
	{
		if ( arraySetId != "" && arraySetId != "null" )
		{
			var textmessage = resourceBundle.publishSetConfirm;
			var index = textmessage.indexOf("@");
			var fpart = textmessage.substring(0,index);
			var spart = textmessage.substring(index+1);
			var msg = fpart + arraySetName + spart;
			var status = confirm(msg);
			if(status == false)
	  		{
			  return;
			}
		}
	}else{
		arraySetId ='';
	}
    	var sessionId=document.getElementById('sessionId').innerHTML;
	window.name="Opener"+sessionId;
   	var winname = "PublishDesign"+sessionId;
    	var popup=window.open('about:blank',winname,'width=600,height=600,scrollbars=yes,status=yes');

	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
		popup.opener=window;
	} else {
		contextpath = "..";
		popup.opener.name=window.name;
	}

    	document.forms[0].target=winname;
	var path = contextpath + "/array/PublishCollabDesign.do?eArrayAction=publishCollabDesign&arraydesignid="+arrayDesignId+"&arraySetID="+arraySetId;
	document.forms[0].action = path
	document.forms[0].submit();
	document.forms[0].target="_self";
}

function viewDesign(arrayDesignId)
{
    	var sessionId=document.getElementById('sessionId').innerHTML;
	window.name="Opener"+sessionId;
   	var winname = "PublishDesign"+sessionId;

    	var popup=window.open('about:blank',winname,'width=800,height=800,scrollbars=yes,status=yes resizable=yes');

	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
		popup.opener=window;
	} else {
		contextpath = "/earray";
		popup.opener.name=window.name;
	}

    	document.forms[0].target=winname;
	var path = contextpath + "/PublishDesignLogin.do?eArrayAction=showPreviewForLogin&publishdesignid="+arrayDesignId;
	document.forms[0].action = path
	document.forms[0].submit();
	document.forms[0].target="_self";
}

function changeSearchableState(viewable,appType)
{
	var msg = '';

	if((appType).toUpperCase() !=  ("TargetEnrichment").toUpperCase()
			&& (appType).toUpperCase() !=  ("RNAEnrichment").toUpperCase() )
	{
		msg = resourceBundle.searchablePublishSetConfirm;
		var status = confirm(msg);
		if(status == false)
		{
			return;
		}
	}

	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}

	var path = contextpath + "/array/showPublicPage.do?eArrayAction=changeSearchableState&viewable="+viewable;
	document.forms[0].action = path
	document.forms[0].submit();
}

function backToPublishSearch()
{
	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "/earray";
	}

	var path = contextpath + "/showPublishCriterion.do?action=displayCriterionPage";
	document.forms[0].action = path
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: this function is called from homepage for GP app type for Bait tiling, when user click view design link
**************************************************************************************************************/
function viewprobedesign(id)
{
	var contextpath = document.forms[0].elements['contextPathHidden'].value;
    var winname = "ProbeDownload_selectformat";
    var path=contextpath+"/probedesign/displayViewDesignResult.do?eArrayAction=viewBaitTilingResults&jobId="+id;
    window.open(path,winname, "width=1600,height=900 scrollbars=no");










}

function normalizationGuidance(appType)
{
	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}
   	var path = contextpath + "/pages/home/Custom_Design_Normalization_Guidance.jsp?appType=" + appType;
	window.open(path,"Contact_Normalization_Support", "width=650,height=550,location=no, resizable=yes, scrollbars=yes,top=50,left=50");
}

function replicateGuidance(appType)
{
	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}
	var path = contextpath + "/pages/home/Custom_Design_Replicate_Guidance.jsp?appType=" + appType;
	window.open(path,"Contact_Replicate_Support", "width=650,height=550,location=no, resizable=yes, scrollbars=yes,top=50,left=50");
}

function toggleremovepg()
{
	// enable disable remove pg button
	var eleArr = document.forms[0].elements;
	for (var i=0;i<eleArr.length;i++)
	{
		var e = eleArr[i];
		if (e.type == 'checkbox' && e.name == 'removedProbeGroupIds' )
		{
			e.checked = false
			document.forms[0].remove.disabled = true;
		}
		if (e.type == 'checkbox' && e.name == 'normRemovedPGIds')
		{
			e.checked =false
			document.forms[0].normRemove.disabled = true;
		}
		if (e.type == 'checkbox' && e.name == 'replRemovedPGIds')
		{
			e.checked =false
			document.forms[0].replRemove.disabled = true;
		}
		if (e.type == 'checkbox' && e.name == 'removedSnpProbeGroupIds')
		{
			e.checked =false
			document.forms[0].snpRemove.disabled = true;
		}
	}
}

function removepgForWizard(pgDetail)
{
	var textmessage = "<bean:message bundle='arraydesignlabel' key='key.probegroup.remove.message.fromADesign' />";
	var eleArr;

	if(pgDetail == "snpPG"){
		eleArr = document.getElementsByName("removedSnpProbeGroupIds");
	}
    else if(pgDetail == "replicatePG"){
	    eleArr = document.getElementsByName("replRemovedPGIds");
    }
	else if(pgDetail == "normalizationPG") {
	    eleArr = document.getElementsByName("normRemovedPGIds");
	}
	else{
		eleArr = document.getElementsByName("removedProbeGroupIds");
	}

	var checkBoxValuesArray = new Array() ;
	for (var i=0;i<eleArr.length;i++)
		{
			var e = eleArr[i];
			if(eleArr[i].checked){
				checkBoxValuesArray[i] = e.value;
			}

		}
	if(document.forms[0].enableArraySet)
	{
		if(document.forms[0].enableArraySet.checked)
			textmessage = "<bean:message bundle='arraysetmessages' key='key.probegroup.remove.message.fromAset' />";
	}
	//openLoadingWindow(textmessage);
	document.forms[0].target="_self";
	document.forms[0].action="../array/editArrayDesign.do?eArrayAction=removepg&pgDetail="+pgDetail+ "&removeIDS="+checkBoxValuesArray+ "&fromWizardRemovePage=true";
	document.forms[0].submit();
}

/*************************************************************************************************************
Purpose: This function is called when user clicks on Move To AgilentCatalog link on search result
**************************************************************************************************************/
function moveToAgilentCatalog(arrayDesignID,arraySetID,applicationType)
{
	var status ;
	if(arraySetID!=null && arraySetID!="")
	{
		openAlertDialog("error",resourceBundle.moveSetWarning);
		return;
	}
	if(applicationType == 'TargetEnrichment' || applicationType == 'RNAEnrichment'){
		status = confirm(resourceBundle.TargetEnrichmentMoveToAgilentCatalogWarning);
	}
	else {
		status = confirm(resourceBundle.moveToAgilentCatalogWarning);
	}
	if(status == true) {
	  	var sessionId=document.getElementById('sessionId').innerHTML;
	   	var contextpath = '';
	   	if (dojo.isIE)
	   	{
	   		contextpath = getElementHTML('hiddenContextPath');
	   	} else
	   	{
	   		contextpath = "..";
	   	}
	    	urlAction=contextpath + "/common/moveToAgilentCatalog.do?eArrayAction=executeMoveToAgilentCatalog&submittype=ajax&arrayDesignId="+arrayDesignID;
		var form = document.forms['searchForm'];
		dojo.xhrPost
		(
		  {
			 url: urlAction,
			 form: form,
			 headers: {'X-Requested-With': 'XMLHttpRequest'},

			 mimetype: "text/html",
			 changeUrl: true,
			 load: function( value)
			 {
				 processMoveToCatalogResponse(value);
			 },
				error: function(error) {
				openAlertDialog("error",error.message);
			 }
			}
		 );
	}
}

/*************************************************************************************************************
Purpose: This function is called when user clicks on Move To AgilentCatalog
	link on search result on GP lib set result
**************************************************************************************************************/
function moveToGPAgilentCatalog(libId,libcount,applicationType)
{
	if(libcount != null && libcount > 0)
	{
		var status = confirm(resourceBundle.movelibSetWarning);
  		if(status == true)
  		{
  			var contextpath = '';
			if (dojo.isIE) {
				contextpath = getElementHTML('hiddenContextPath');
			} else {
				contextpath = "..";
			}
			var path = contextpath + "/array/moveLibSet.do?eArrayAction=moveLibSetPage&libId="+libId;
			document.forms[0].action=path;
			document.forms[0].submit();
		} else {
			moveToAgilentCatalog(libId, null,applicationType);
		}
	} else {
		moveToAgilentCatalog(libId, null,applicationType);
	}
}

function processMoveToCatalogResponse(value)
{
	dojo.byId("messagesId").innerHTML = value;
	var dlgProg=null;

	if(dojo.byId("errormessagetable")){
		dojo.byId("dialogerr").style.display="";
		dlgProg = dijit.byId("dialogerr");
		if(dlgProg){
			dlgProg.destroy();
		}
		dojo.parser.parse(dojo.byId("messagesId"));
		dlgProg = dijit.byId("dialogerr");
	}
	else if(dojo.byId("messagetable")){
		dojo.byId("dialogmsg").style.display="";
		dlgProg = dijit.byId("dialogmsg");
		if(dlgProg){
			dlgProg.destroy();
		}
		dojo.parser.parse(dojo.byId("messagesId"));
		dlgProg = dijit.byId("dialogmsg");
	}
	dlgProg.show();
}

function downloadDesign(id)
{
	var contextPath = document.getElementById("hiddenContextPath").value;
   	//document.forms['probeDesignForm'].action=contextPath+"/probedesign/downloadProbeDesignResults.do?eArrayAction=downloadBaitTilingResults&pdiId="+id;
   	//document.forms['probeDesignForm'].submit();
   	
   	var sessionAttribute = 'downloadingModule' + 'BaitTilingResults' + id;
   	var path = contextPath + "/CommonDownloadServlet?downloadModuleType=BaitTilingResults&pdiId="+id+"&from=BaitTilingWizard" + "&sessionAttribute=" + sessionAttribute;
   	
   	openDownloadWindow(path, sessionAttribute);
}

/*************************************************************************************************************
Purpose: This function is called when user clicks on 'Create Library Set' button.
**************************************************************************************************************/
function createLibSet(fromPage)
{
	var path="selectLib.do?action=setFromPage&fromPage=" + fromPage;
	document.forms['searchForm'].action=path;
	document.forms['searchForm'].submit();
}

/*************************************************************************************************************
Purpose: This function is called when user clicks on 'Partnumber Notification' button.
**************************************************************************************************************/
function notificationForNAPartNo(arrayId)
{
	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}
	var path = contextpath + "/array/partNoNotification.do?action=display&arraydesignid="+arrayId;
	document.forms[0].action=path;
	document.forms[0].submit();
}

function loadteDetails()
{
 var ajaxCallConditionString = document.getElementById('baseCoverageIdHidden').value;
 if( ajaxCallConditionString  ==  'Calculating...'){
	 renderTEDetailsPage();
   }
}

function renderTEDetailsPage()
{
    var arraydesignid = document.forms['arrayDesignForm'].arrayDesignId.value;


    var contextpath = getElementHTML('hiddenContextPath');
    if(dojo.byId('baseCoverageId')){
    dojo.byId('baseCoverageId').innerHTML =   "Calculating...";
	dojo.byId('uniqueBaitId').innerHTML =   "Calculating...";
    }
	var kw =
 	{
     	url:  contextpath + "/array/displayViewArrayDesign.do?eArrayAction=calculateTEDetails&arraydesignid="+arraydesignid,
     	load: function(data)
     	{

						dojo.byId("dynamicFields").innerHTML = data;
						dojo.parser.parse(dojo.byId("dynamicFields"));
						var estimatedString ="";
					 	if (document.getElementById('isEstimtdDynamicHidden').value == 'true' )
						{
								estimatedString = " " + resourceBundle.estimatedLabel;

						}
					 	if(dojo.byId('baseCoverageId')){
						dojo.byId('baseCoverageId').innerHTML =   dojo.byId('bcDynamicHidden').value  + ' ' +estimatedString ;
						dojo.byId('uniqueBaitId').innerHTML =   dojo.byId('ubDynamicHIdden').value;
					 	}
					},
     	error: function(type, error)
     	{
						if(dojo.byId('baseCoverageId')){
						dojo.byId('baseCoverageId').innerHTML =   "Error...";
						dojo.byId('uniqueBaitId').innerHTML =   "Error...";
						}
					},
     	headers: {'X-Requested-With': 'XMLHttpRequest'},
					mimetype: "text/html"
	};
	//bind this configuration
	dojo.xhrPost(kw);


}


function snpPGGuidance(appType)
{
	var contextpath = '';
	if (dojo.isIE) {
		contextpath = getElementHTML('hiddenContextPath');
	} else {
		contextpath = "..";
	}
	var path = contextpath + "/pages/home/Custom_Design_SNP_Guidance.jsp?appType=" + appType;
	window.open(path,"Contact_SNP_Support", "width=650,height=550,location=no, resizable=yes, scrollbars=yes,top=50,left=50");
}
function removepg(pgDetail)
{
	var textmessage = "<bean:message bundle='arraydesignlabel' key='key.probegroup.remove.message.fromADesign' />";
	if(document.forms[0].enableArraySet)
	{
		if(document.forms[0].enableArraySet.checked)
			textmessage = "<bean:message bundle='arraysetmessages' key='key.probegroup.remove.message.fromAset' />";
	}
	//openLoadingWindow(textmessage);
	document.forms[0].target="_self";
	document.forms[0].action="../array/editArrayDesign.do?eArrayAction=removepg&pgDetail="+pgDetail;
	document.forms[0].submit();
}

function continueMutagenesisWizard(jobID, status)
{
	var contextpath = getElementHTML('hiddenContextPath');
	var screenWidth= 950;
	var screenHeight=685;
	
	var left = (screen.width/2)-(screenWidth/2);
    var screenConfig ='width=' +  screenWidth.toString() + ',height=' + screenHeight.toString() +',scrollbars=yes,location=no,resizable=no,top=50,left='+left.toString();
    windowObj=window.open(contextpath+"/mutagenesis/showMutagenesisLibrary.do?eArrayAction=continueJob&jobID="+jobID,'popupindexpage',screenConfig);
    windowObj.focus();
    
    
}

function deleteMutagenesisWizard(jobID, status)
{
var contextpath = '';

	contextpath = getElementHTML('hiddenContextPath');

var path = contextpath + "/mutagenesis/showMutagenesisLibrary.do?eArrayAction=deleteJob&jobID="+jobID;
document.forms[0].action=path;
document.forms[0].submit();
}

function downloadLibrary(libraryId){
	  var contextpath = getElementHTML('hiddenContextPath');
	  document.forms[0].action= contextpath+"/mutagenesis/downloadLibrary.do?action=displaylist&libraryId="+libraryId;
	  document.forms[0].submit();
	}
function orderMutagenesisLibrary(libraryId){
	
	var contextpath = getElementHTML('hiddenContextPath');
	var kw =
	{
		url:contextpath+"/mutagenesis/orderLibrary.do?action=checkForErrorsBeforeOrderingProcess&libraryId="+libraryId,
		form: document.forms[0],
		load: function(value)
		{

			 var errorData = JSON.parse(value);
			 if(errorData!=null && errorData.errorStatus=="true")
			 {
				
				 openAlertDialog("error",errorData.errorMessage);
				 
				 
			 }
			 else
			 {	  
				 document.forms[0].action= contextpath+"/mutagenesis/orderLibrary.do?action=displayOrderDetails&libraryId="+libraryId;
				  document.forms[0].submit();
			 }
		

		},
		error: function(error) 
		{
			alert( "Error : "+error );
		},

		headers: {'X-Requested-With': 'XMLHttpRequest'},
		mimetype: "text/html"
	};
	//bind this configuration
	dojo.xhrPost(kw);
	  
	  
	}



function toggleEditableFields(groupType, pgid, index)
{
	// for control type enable evenly distribute and disable replicatecount
	if ( groupType == PGTYPE_CONTROL )
	{
		var replCountName = 'probeGroupInfo.replicateCount(' + pgid + ')';
		var objReplicateCount = document.forms[0].elements[replCountName];
		if ( objReplicateCount )
		{
			objReplicateCount.value  = 1;
			objReplicateCount.readOnly = true;
			//objReplicateCount.disabled = true;
			replicateCount[index] = 1 * 1;
		}
		var replCountDisabledName = 'probeGroupInfo.replicateCountDisabled(' + pgid + ')';
		var objReplicateCountDisabled = document.forms[0].elements[replCountDisabledName];
		if ( objReplicateCountDisabled )
		{
			objReplicateCountDisabled.value = "true";
	 	}
		if ( enablearrayset)
		{
			var evenlyDistName = "probeGroupInfo.evenlyDistribute(" + pgid+ ")";
			var objEvenlyDist = document.forms[0].elements[evenlyDistName];
			var evenlydistcontrolradio = "pgdiv" + evenlyDistName;
			var evenlydistcontrolradiodiv = dojo.byId(evenlydistcontrolradio);
			if(evenlydistcontrolradiodiv !=null){
				evenlydistcontrolradiodiv.style.display = 'block';
			}
			objEvenlyDist[0].disabled = false;
			objEvenlyDist[1].disabled = false;
			var evenlyDistDisabledName = "probeGroupInfo.evenlyDistributeDisabled(" + pgid+ ")";
			var objEvenlyDistDisabled = document.forms[0].elements[evenlyDistDisabledName];
			if ( objEvenlyDistDisabled)
			{
				objEvenlyDistDisabled.value = "false"
			}
		}
		var objgroupTypeName =  'probeGroupInfo.probegroupType(' + pgid + ')';
		var objgroupType = document.forms[0].elements[objgroupTypeName];
		if (objgroupType)
		{
			objgroupType.value = PGTYPE_CONTROL;
		}
	}else if ( groupType == PGTYPE_BIOLOGICAL )
	{
	 	var replCountName = 'probeGroupInfo.replicateCount(' + pgid + ')';
	 	var objReplicateCount = document.forms[0].elements[replCountName];
	 	if ( objReplicateCount )
	 	{
	 		objReplicateCount.readOnly = false;
	 		objReplicateCount.value  = 1;
	 		objReplicateCount.disabled = false;
	 	 	replicateCount[index] = 1 * 1;
	 	}
		var replCountDisabledName = 'probeGroupInfo.replicateCountDisabled(' + pgid + ')';
		var objReplicateCountDisabled = document.forms[0].elements[replCountDisabledName];
		if ( objReplicateCountDisabled )
		{
			objReplicateCountDisabled.value = "false";
	 	}
	 	if ( enablearrayset)
	 	{
			var evenlyDistName = "probeGroupInfo.evenlyDistribute(" + pgid+ ")";
			var objEvenlyDist = document.forms[0].elements[evenlyDistName];
			objEvenlyDist[0].disabled = true;
			objEvenlyDist[0].checked = true;
			objEvenlyDist[1].disabled = true;
			var evenlydistbiodiv = "pgdiv" + evenlyDistName;
			var evenlydistbioradiodiv = dojo.byId(evenlydistbiodiv);
			if(evenlydistbioradiodiv != null){
				evenlydistbioradiodiv.style.display = 'none';
			}
			var evenlyDistDisabledName = "probeGroupInfo.evenlyDistributeDisabled(" + pgid+ ")";
			var objEvenlyDistDisabled = document.forms[0].elements[evenlyDistDisabledName];
			if ( objEvenlyDistDisabled)
			{
				objEvenlyDistDisabled.value = "true";
			}
	 	}
		var objgroupTypeName =  'probeGroupInfo.probegroupType(' + pgid + ')';
		var objgroupType = document.forms[0].elements[objgroupTypeName];
		if (objgroupType)
		{
			objgroupType.value = PGTYPE_BIOLOGICAL;
		}
	 }

    }

function onremovepgclick1()
{
	// enable disable remove pg button

	var eleArr = document.getElementsByName("removedProbeGroupIds");
	var checkedcount = 0;
	for (var i=0;i<eleArr.length;i++)
	{
		var e = eleArr[i];

		if (e.type == 'checkbox' && e.name == 'removedProbeGroupIds' && e.checked == true )
		{
			checkedcount = checkedcount + 1;
		}
	}

	var removeButton = document.getElementById("remove");
	if (checkedcount == 0 )
	{
		removeButton.disabled = true;
	}else
	{
		removeButton.disabled = false;
	}

}

function onnormremovepgclick()
{
	// enable disable remove pg button
	var eleArr = document.getElementsByName("normRemovedPGIds");
	var checkedcount = 0;
	for (var i=0;i<eleArr.length;i++)
	{
		var e = eleArr[i];
		if (e.type == 'checkbox' && e.name == 'normRemovedPGIds' && e.checked == true )
		{
			checkedcount = checkedcount + 1;
		}
	}
    var removeNormButton = document.getElementById("normRemove");
	if (checkedcount == 0 )
	{
		removeNormButton.disabled = true;
	}else
	{
		removeNormButton.disabled = false;
	}
}
function onreplremovepgclick()
{
	// enable disable remove pg button
	var eleArr = document.getElementsByName("replRemovedPGIds");
	var checkedcount = 0;
	for (var i=0;i<eleArr.length;i++)
	{
		var e = eleArr[i];
		if (e.type == 'checkbox' && e.name == 'replRemovedPGIds' && e.checked == true )
		{
			checkedcount = checkedcount + 1;
		}
	}
	var removeReplButton = document.getElementById("replRemove");
	if (checkedcount == 0 )
	{
		removeReplButton.disabled = true;
	}else
	{
		removeReplButton.disabled = false;
	}
}


function onremovesnppgclick1()
{

	var eleArr = document.getElementsByName("removedSnpProbeGroupIds");
	var checkedcount = 0;
	for (var i=0;i<eleArr.length;i++)
	{
		var e = eleArr[i];
		if (e.type == 'checkbox' && e.name == 'removedSnpProbeGroupIds' && e.checked == true )
		{
			checkedcount = checkedcount + 1;
		}
	}
	var removeSNPButton = document.getElementById("snpRemove");
	if (checkedcount == 0 )
	{
		removeSNPButton.disabled = true;
	}else
	{
		removeSNPButton.disabled = false;
	}

}

function callPGPicker() {
}

function submitEnableArraySet(enablechkbox)
{
	var enablemessage = "Please wait<br> Enable Microarray Set in progress.";
	var disablemessage = "Please wait<br> Disable Microarray Set in progress.";
	var enableArraySetValue;
	if (enablechkbox.checked)
	{
		enableArraySetValue = "true";
	} else
	{
		enableArraySetValue = "false";
	}

	disableButton();
	document.forms[0].target="_self";
	document.forms[0].action="../array/createArrayDesign.do?eArrayAction=enableArrayset&enableArraySetValue="+enableArraySetValue;
	document.forms[0].submit();
}

function boostingApplied(enablechkbox)
{

	if (enablechkbox.checked)
	{
		document.getElementById("boostingOptionAll").disabled=false;
		document.getElementById("boostingOptionCatalog").disabled=false;
		document.getElementById("boostingButton").disabled=false;
	} else
	{

		document.getElementById("boostingOptionAll").disabled=true;
		document.getElementById("boostingOptionCatalog").disabled=true;
		document.getElementById("boostingButton").disabled=true;
	}
}

function applyBoosting(){

	var okActionPath = "applyBoostingConfirm()";
	var cancelActionPath = "cancelBoosting()";

	openConfirmationDialog(resourceBundle.confirmlabel,resourceBundle.applyboostinglabel,resourceBundle.yesbuttonlabel,okActionPath,resourceBundle.nobuttonlabel,cancelActionPath);
	}

function applyBoostingConfirm(){
	var boostingOptions = document.forms[0].boostingOptions;
	for(i=0;i<boostingOptions.length;i++){
			if(boostingOptions[i].checked==true){
				document.getElementById("boostingOption").value=boostingOptions[i].value;

			}
		}

	 var contextpath = getElementHTML('hiddenContextPath');
	 //document.forms[0].target="_self";
	 if(dijit.byId("confirmationDialog"))
	 {
		 dijit.byId("confirmationDialog").hide();
	 }
	 var  dlgLoading = dijit.byId("loadingDiv");
	 dlgLoading.show();
     document.forms[0].action=contextpath+"/array/editArrayDesign.do?eArrayAction=updatepg";
     document.forms[0].submit();

}

function cancelBoosting()
{
	closeConfirmDialog();
	var prevOption = document.getElementById("boostingOption").value;

	var boostingOptions = document.forms[0].boostingOptions;
	for(i=0;i<boostingOptions.length;i++){
		  if(prevOption==boostingOptions[i].value){
			  boostingOptions[i].checked="checked";
		  }
	  }
}

function disableButton()
	{
		if(document.forms[0].saveButton != null) {
			document.forms[0].saveButton.disabled = 'true';
		}
		if(document.forms[0].resetButton != null) {
			document.forms[0].resetButton.disabled = 'true';
		}
		if(document.forms[0].cancelButton != null) {
			document.forms[0].cancelButton.disabled = 'true';
		}
}
function toggleEditableFieldsForGP(groupType, pgid, index)
{
	// for control type enable evenly distribute and disable replicatecount
	if ( groupType == PGTYPE_CONTROL )
	{
		var replCountName = 'probeGroupInfo.replicateCount(' + pgid + ')';
		var objReplicateCount = document.forms[0].elements[replCountName];
		if (objReplicateCount)
		{
			replicateCount[index] = objReplicateCount.value;
		}
		var objgroupTypeName =  'probeGroupInfo.probegroupType(' + pgid + ')';
		var objgroupType = document.forms[0].elements[objgroupTypeName];
		if (objgroupType)
		{
			objgroupType.value = PGTYPE_CONTROL;
		}
	}else if ( groupType == PGTYPE_BIOLOGICAL )
	{
	 	var replCountName = 'probeGroupInfo.replicateCount(' + pgid + ')';
	 	var objReplicateCount = document.forms[0].elements[replCountName];
	 	if (objReplicateCount)
	 	{
	 	 	replicateCount[index] = objReplicateCount.value;
	 	}
		var objgroupTypeName =  'probeGroupInfo.probegroupType(' + pgid + ')';
		var objgroupType = document.forms[0].elements[objgroupTypeName];
		if (objgroupType)
		{
			objgroupType.value = PGTYPE_BIOLOGICAL;
		}
	}
}

function modifyProbegroupControlTypeWrapper(index, newcontrltype, pgid)
{
	pgControlType[index] = newcontrltype;

	if (newcontrltype == PGCONTROL_POSITIVE ||  newcontrltype == PGCONTROL_NEGATIVE ) {
		// change group type
		pgType[index] = PGTYPE_CONTROL;
	} else {
		pgType[index] = PGTYPE_BIOLOGICAL;
	}

	// toggle evenly distribute and replicate count
	if(document.forms[0].baitLength)
		toggleEditableFieldsForGP(pgType[index],pgid,index);
	else
		toggleEditableFields(pgType[index],pgid,index);

	// recalculate statistics
	var cgCount = getElementValue("controlGridProbeCount");

	if (document.forms[0].selArrayFormat)
	{

		var selindex = document.forms[0].selArrayFormat.selectedIndex;

		if(selindex > -1 && document.forms[0].selArrayFormat[selindex].value != null &&
			document.forms[0].selArrayFormat[selindex].value != '')
		{
			if(document.forms[0].baitLength)
			{
				var gpapptype = "true";
				var statistics = calculateStatisticsForGP (slArrayCountList[selindex],
										slTotalFeatureList[selindex],
										cgCount,
										probeCount,
										replicateCount,
										pgType,
										enablearrayset,
										gpapptype);

				setElementHTML('divPercentFeatureOccupied',roundNumber(statistics.percentFeatureOccupied ) + " %");
				setElementValue("percentFeatureOccupied",roundNumber(statistics.percentFeatureOccupied ));
			} else {
				var statistics = calculateStatistics (slArrayCountList[selindex],
									slTotalFeatureList[selindex],
									cgCount,
									probeCount,
									replicateCount,
									pgType,
									enablearrayset,
								    normalizationProbesCount,
								    replicateProbeCount,
								    replicateReplicateCount);
									updateStatisticsDisplay(statistics);

				// display error message if control per array exceeds half of feature per slide

				var featurecount = slTotalFeatureList[selindex];
				var message = resourceBundle.designCtrlPrbsFillHalf;
				var retval = validateControlCount(statistics,featurecount,message);
			}

			updateStatisticsDisplay(statistics);
		}
	}
}

function modifyFeaturePerTargetWizard()
{
	var selindex = document.forms[0].indexSelArrayFormat.value;
	// recalculate statistics

	var cgCount = getElementValue("controlGridProbeCount");

	if(document.forms[0].distinctTargets) {
		var featurePerTarget = document.forms[0].featurePerTarget.value;
		var distinctTargets = document.forms[0].distinctTargets.value;

		statistics = calculateStatisticsMicroRNA (slArrayCountList[selindex],
							slTotalFeatureList[selindex],
							cgCount ,
							probeCount,
							enablearrayset,
							featurePerTarget,
							distinctTargets);

	}

	updateStatisticsDisplay(statistics);

	// display error message if control per array exceeds half of feature per slide

	var featurecount = slTotalFeatureList[selindex];
	var message = resourceBundle.designCtrlPrbsFillHalf;
	var retval = validateControlCount(statistics,featurecount,message);
}

function modifyProbegroupControlTypeWizard(selindex,index, newcontrltype, pgid)
{
	pgControlType[index] = newcontrltype;
	if ( newcontrltype == PGCONTROL_POSITIVE ||  newcontrltype == PGCONTROL_NEGATIVE )
	{
		// change group type
		pgType[index] = PGTYPE_CONTROL;
	}
	else
		pgType[index] = PGTYPE_BIOLOGICAL;

	// toggle evenly distribute and replicate count
	if(!document.forms[0].baitLength)
		toggleEditableFields(pgType[index],pgid,index);
	else
		toggleEditableFieldsForGP(pgType[index],pgid,index);

	// recalculate statistics

	var cgCount = getElementValue("controlGridProbeCount");

	if(document.forms[0].baitLength) {
		var gpapptype = "true";
		var statistics = calculateStatisticsForGP (slArrayCountList[selindex],
									    slTotalFeatureList[selindex],
									    cgCount,
									    probeCount,
									    replicateCount,
									    pgType,
									    enablearrayset,
									    gpapptype);

		setElementHTML('divPercentFeatureOccupied',roundNumber(statistics.percentFeatureOccupied ) + " %");
		setElementValue("percentFeatureOccupied",roundNumber(statistics.percentFeatureOccupied ));
		updateStatisticsDisplay(statistics);
	} else {
		var statistics = calculateStatistics (slArrayCountList[selindex],
									    slTotalFeatureList[selindex],
									    cgCount,
									    probeCount,
									    replicateCount,
									    pgType,
									    enablearrayset,
									    normalizationProbesCount,
									    replicateProbeCount,
									    replicateReplicateCount);
		updateStatisticsDisplay(statistics);

		// display error message if control per array exceeds half of feature per slide

		var featurecount = slTotalFeatureList[selindex];
		var message = resourceBundle.designCtrlPrbsFillHalf;
		var retval = validateControlCount(statistics,featurecount,message);
	}

}


function orderArrayDesignRequestQuote(arraydesignid,arraysetid,arraysetname,applicationType,isXT){
	orderArrayDesignRequestQuote(arraydesignid,arraysetid,arraysetname,applicationType,isXT,false);
}

function orderArrayDesignRequestQuote(arraydesignid,arraysetid,arraysetname,applicationType,isXT,isXT2)
{
	var contextpath = '';
	var path = '';
	if (dojo.isIE)
		contextpath = getElementHTML('hiddenContextPath');
	else
		contextpath = "..";
	if ( arraysetid != "" && arraysetid != "null" )
	{
		var textmessage;
		if(applicationType == 'TargetEnrichment' || applicationType == 'RNAEnrichment'){
		    textmessage = resourceBundle.orderLibSetConfirm;
		}
		else{
			textmessage = resourceBundle.orderSetConfirm;
		}
		var index = textmessage.indexOf("@");
		var fpart = textmessage.substring(0,index);
		var spart = textmessage.substring(index+1);
		var msg = fpart + arraysetname + spart;
		var status = confirm(msg);

		if(status == true)
  		{
			path = contextpath + "/array/orderComplete.do?eArrayAction=displayOrderDetails&ArraySetId=" +
				arraysetid + "&fromPage=searchArrayDesignPage&isXT="+isXT+"&isXT2="+isXT2;
		}
		else
		{
			path = contextpath + "/array/orderComplete.do?eArrayAction=displayOrderDetails&ArrayDesignId=" +
				arraydesignid + "&fromPage=searchArrayDesignPage&isXT="+isXT+"&isXT2="+isXT2;

		}
	} else
	{
		path = contextpath + "/array/orderComplete.do?eArrayAction=displayOrderDetails&ArrayDesignId=" +
			arraydesignid + "&fromPage=searchArrayDesignPage&isXT="+isXT+"&isXT2="+isXT2;
	}
	document.forms[0].action= path;
	document.forms[0].submit();
}
function calculateTEBaseCoverage()
{
    var arraydesignid = document.forms['arrayDesignForm'].arrayDesignId.value;
    var contextpath = getElementHTML('hiddenContextPath');
   	var kw =
 	{
     	url:  contextpath + "/array/displayViewArrayDesign.do?eArrayAction=calculateTEDetails&arraydesignid="+arraydesignid,
     	load: function(data)
     	{						
					 	
					},
     	error: function(type, error)
     	{
						
					},
     	headers: {'X-Requested-With': 'XMLHttpRequest'},
					mimetype: "text/html"
	};
	//bind this configuration
	dojo.xhrPost(kw);


}