CustomFISH design files available for download

SureDesign offers many different CustomFISH design files for download. See the table below for a description of each file.

Files for CustomFISH designs (Single Probe)

CustomFISH designs of the Single Probe category have five files available for download.

File name	Description
[design ID]_Report.pdf	This PDF contains summary information on the desired target region, the design region used for oligo selection, coverage and GC percentage statistics, and other design information. This same information is provided in spreadsheet format in the Report text file.
[design ID]_Report.txt	This text file contains the same information as the PDF report, but in tab-delimited text format.
[design name]_Covered.bed	This BED file contains a single track of the genomic regions that are covered by one or more oligos in the design.
[design name]_Regions.bed	This BED file contains a single track of the desired target region as entered in the CustomFISH wizard during creation of the design. You can use this track to compare the covered regions to the desired target region.
[design name]_Targets.txt	This file lists the target identifier that you entered when creating the design.

Files for CustomFISH designs (Break Apart and Dual Fusion)

CustomFISH designs of the Break Apart or Dual Fusion category have three design files that pertain to the whole design, as well as additional design files that pertain to the designs for the two individual design regions (called "child designs").

Files for the whole design
[design name]_Report.txt	This text file contains information on the target parameters and summary information for the two child designs.
[design name]_Regions.bed	This BED file contains a single track of the design regions for the two child designs. You can use this track to compare the covered regions to the design regions used for oligo selection.
[design name]_Targets.txt	This file contains a list of the target identifier(s) that you entered when creating the design.
Files for the child designs
[design ID]_Report.pdf	This PDF contains summary information on the desired target region, the design region used for oligo selection, coverage and GC percentage statistics, and other design information. This same information is provided in spreadsheet format in the Report text file.
[design ID]_Report.txt	This text file contains the same information as the PDF report, but in tab-delimited text format.
[design name]_Covered.bed	This BED file contains a single track of the genomic regions that are covered by one or more oligos in the child design.
[design name]_Regions.bed	This BED file contains a single track of the desired target region as entered in the CustomFISH wizard during creation of the design. You can use this track to compare the covered regions to the desired target region.
[design name]_Targets.txt	This file lists the genomic coordinates of the design region.