Download SNP probe search results

After you submit a SNP probe search job, and eArray completes it, the job has a status of Complete. You can then download a BED file that contains the IDs and locations of the SNP probes that were returned by the search.

1. Click the Workspace tab, or enter a collaboration.

2. Set the application type to CGH.

3. Click the Probe tab.
   
   The probe search page appears.

4. At the top of the page, select SNP Probe Search.
   
   At the bottom of the page, the Search Results pane displays each of the SNP probe searches that you have submitted, along with its status. If the desired search does not appear, you may need to click Refresh to display the most current list of jobs, or use the Pages links to go to a different page of SNP search jobs.
   
   Click an underlined column heading to sort the list of jobs based on the contents of the column. Click the heading again to reverse the order of the items in the list.

5. In the Actions column of the Search Result pane, next to the name of the desired SNP probe search job, click View.
   
   The SNP Probe Search Result page opens for the selected job. Up to three types of results can be available. For details see View SNP probe search results.

6. On any page of SNP probe search results, click Download.
   
   A File Download dialog box appears. If a Security Information dialog box asks if you want to display the non-secure items, click Yes.

7. Click Save.
   
   A Save As dialog box appears.

8. Select a location for the downloaded file, then click Save.
   
   eArray downloads a *.zip file to the location that you selected. You can extract the BED file from this *.zip archive.

• Note:
  • You cannot download the nucleotide sequences of Agilent SNP probes.
  
  • For SNP probe searches by genomic interval, you can also download the data that appear in the Detail Result tab. In that tab, click Download Detail Results.

See also

CGH+SNP microarrays