View SNP probe search results |
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After a SNP probe search job has a status of Complete, you can view its results. The results that are available depend on the type of SNP probe search. You can use the search results to create a new probe group based on the probes in the given search result, download the results, or to start a new SNP probe search.
Click the Workspace tab, or enter a collaboration.
Set the application type to CGH.
Click the Probe
tab.
The probe search page appears.
At the top of the page, select SNP Probe Search.
At the bottom of the page, the Search Results pane displays the name
of each SNP probe search that you have submitted, along with its status.
If the desired search does not appear, you may need to click Refresh to display the most current
list of jobs, or use the Pages
links to go to a different page of SNP search jobs.
Click an underlined column heading to sort the list of jobs based on
the contents of the column. Click the heading again to reverse the
order of the items in the list.
In the Actions column of the Search
Result pane, next to the name of the desired SNP probe search job,
click View.
The SNP Probe Search Result page opens for the selected job. Up to
three types of results can be available:
Result |
Instructions/Details |
Summary Result |
These results appear by default when you first view the SNP probe search results. They contain information of an overall nature about the search, such as the search criteria that were submitted and the number of probes that were returned. These results are not interval- or probe-specific. |
Detail Result |
(Gene Interval searches only) To view these results, click Detailed Result. They contain information about each genomic interval that was submitted for the search, and overall statistics about the probes that were returned for each interval. |
Probes List |
(Gene Interval searches only) To view these results, click Probes List. A list of up to 10,000 returned probes appears. To view all of the probes if the search returns more than 10,000 probes, download the search results. |
At the bottom of each search result page, several buttons let you take further action:
Close – Closes the search result page.
New SNP Probe Search – Opens the SNP probe search page, where you can set up and submit another SNP probe search.
Create Probe Group – Opens the Create Probe Group page, where you can create a new probe group that contains the probes that were returned by the SNP probe search.
Download – Lets you download a BED file that contains the IDs and locations of the SNP probes that were returned by the search.
Note: You cannot view or download the nucleotide sequences of Agilent SNP probes.
See also