View the High Density (HD) search results |
After you submit an HD-CGH or HD-ChIP probe search, and eArray finishes it, you can view the results.
Click the Workspace tab.
Set the application type to CGH or ChIP.
Click the Probe
tab.
The Probe Search page appears.
Select HD
Probe Search.
The HD Probe Search page appears.
If you want to view the results
of an Advanced HD Probe Search, select Advanced
HD Probe Search. eArray tracks the search results from standard
and advanced HD searches separately.
At the bottom of the page, the Search Results pane displays a list
of the HD searches of the selected type that you have submitted, along
with their status. Click an underlined column heading to sort the
list of searches based on the contents of the column. Click the heading
again to reverse the order of the sort.
In the Actions
column of the search results, next to the desired completed search,
click View.
An HD Search Results page appears, displaying the Summary results of
the specific HD search.
Click the appropriate tab at the top of the page to see the desired search result:
Result |
Details |
Summary Result |
Lists the search criteria you provided when you requested the search, and a summary of the search results. These results reflect an overall view of the search results, and are not interval-, annotation-, or probe-specific. |
Detail Result |
Lists information similar to the Summary Result, except the results are broken down by genomic interval or annotation. |
Probes List |
Lists each of the probes retrieved
by your HD probe search. The list contains the information shown
for probes throughout eArray, such as the Probe ID, species, and
associated annotations, but it also contains the Exon count and
the Intragenic count of probes. |
Chromosome View |
Shows the HD search results graphically. The genome appears at three levels of detail. A horizontal blue bar (the "cursor") appears in all panes, and reflects the center of the region that appears in the right pane.
To view probes in a specific region of a chromosome:
The specified region appears within the dotted blue rectangle in the center pane. In the right pane, a more detailed view of the specified region appears, including the names of the returned probes.
|
From any of the probe search results, you can download the probes to your computer, create a new HD probe group with the probe search results, and start a new HD probe search.
See also
What is a High Density (HD) search?
Perform a High Density (HD) search
View the search criteria for HD searches